SNP Profiles of PA 150 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
TTCCCTCCGGTTATACCCGGGGGGTTAA
1._PA_150_[PER]
_______AC___GG__
2._PA_150_[PER]
_______AC___GG__
3._PA_150_[PER]
_______AC___GG__
4._PA_150_[PER]
_______AC___GG__
5._GC-01-034-2-11
_______CC___AG__
6._GC-01-034-2-11
_______CC___AG__
7._GC-01-034-2-11
_______CC___AG__
8._GC-01-034-2-11
_______CC___AG__
9._PA_150_[PER]
_______CC___AG__
10._PA_150_[PER]
_______CC___AG__
11._PA_150_[PER]
_______CC___AG__
12._PA_150_[PER]
_______CC___AG__
13._GC-01-034-2-11
_______AC___AG__
14._GC-01-034-2-11
_______AC___AG__
15._GC-01-034-2-11
_______AC___AG__
16._GC-01-034-2-11
_______AC___AG__
17._GC-01-034-2-11
_______AC___AG__
18._RUQ_1731
_______AC___GG__
19._PA_150_[PER]_Fld#_173_Plt#_1
_______AC___GG__
20._PA_150_[PER]
_______AC___AG__
21._PA_150_[PER]
_______AC___AG__
22._PA_150_[PER]
_______AC___AG__
23._PA_150_[PER]
_______AC___AG__
24._PA_150_[PER]
_______AC___AG__
25._PA_150_[PER]
_______AC___AA__
26._PA_150_[PER]
_______AA___AA__
27._GC-01-034-2-11
_______AA___AA__
28._PA_150_[PER]
_______CC___AA__
29._GC-01-34-2-11
_______CC___AG__
30._GC-01-34-2-11
_______AC___AG__
31._GC-01-34-2-11
_______AC___AG__
 1516171819202122232425262728
_Input profile
GGAACCAACCAAGGCGAAACCTCCAGCC
1._PA_150_[PER]
_____AC_CG_AC____
2._PA_150_[PER]
_____AC_CG_AC____
3._PA_150_[PER]
_____AC_CG_AC____
4._PA_150_[PER]
_____AC_CG_AC____
5._GC-01-034-2-11
GG____AC_CG_CCCT___
6._GC-01-034-2-11
GG____AC_CG_CCCT___
7._GC-01-034-2-11
GG____AC_CG_CCCT___
8._GC-01-034-2-11
GG____AC_CG_CCCT___
9._PA_150_[PER]
_____AC_CG_CC____
10._PA_150_[PER]
_____AC_CG_CC____
11._PA_150_[PER]
_____AC_CG_CC____
12._PA_150_[PER]
_____AC_CG_CC____
13._GC-01-034-2-11
GG____AC_GG_AACT___
14._GC-01-034-2-11
GG____AC_GG_AACT___
15._GC-01-034-2-11
GG____AC_GG_AACT___
16._GC-01-034-2-11
GG____AC_GG_AACT___
17._GC-01-034-2-11
GG____AC_GG_AACT___
18._RUQ_1731
GG____AC_CG_ACAG___
19._PA_150_[PER]_Fld#_173_Plt#_1
GG____AC_CG_ACAG___
20._PA_150_[PER]
_____AC_GG_AA____
21._PA_150_[PER]
_____AC_GG_AA____
22._PA_150_[PER]
_____AC_GG_AA____
23._PA_150_[PER]
_____AC_GG_AA____
24._PA_150_[PER]
_____AC_GG_AA____
25._PA_150_[PER]
_____CC_GG_AA____
26._PA_150_[PER]
_____AC_CC_AC____
27._GC-01-034-2-11
AG____AC_CC_ACCT___
28._PA_150_[PER]
_____AC_GG_AC____
29._GC-01-34-2-11
GG____AC_CG_CCAG___
30._GC-01-34-2-11
GG____AC_GG_AAAG___
31._GC-01-34-2-11
GG____AC_GG_AAAG___
 2930313233343536373839404142
_Input profile
AACCCCGGAGCTTTAAAATTGGGGCCAG
1._PA_150_[PER]
AA__GG______GG__AG
2._PA_150_[PER]
AA__GG______GG__AG
3._PA_150_[PER]
AA__GG______GG__AG
4._PA_150_[PER]
AA__GG______GG__AG
5._GC-01-034-2-11
AG_CTGGAG__AA_CGGGGG_AG
6._GC-01-034-2-11
AG_CTGGAG__AA_CGGGGG_AG
7._GC-01-034-2-11
AG_CTGGAG__AA_CGGGGG_AG
8._GC-01-034-2-11
AG_CTGGAG__AA_CGGGGG_AG
9._PA_150_[PER]
AG__GG______GG__AG
10._PA_150_[PER]
AG__GG______GG__AG
11._PA_150_[PER]
AG__GG______GG__AG
12._PA_150_[PER]
AG__GG______GG__AG
13._GC-01-034-2-11
GG_CTGTGG__AA_GGGGGG_GG
14._GC-01-034-2-11
GG_CTGTGG__AA_GGGGGG_GG
15._GC-01-034-2-11
GG_CTGTGG__AA_GGGGGG_GG
16._GC-01-034-2-11
GG_CTGTGG__AA_GGGGGG_GG
17._GC-01-034-2-11
GG_CTGTGG__AA_GGGGGG_GG
18._RUQ_1731
___CCAG__AA_GGCCGG_AG
19._PA_150_[PER]_Fld#_173_Plt#_1
___CCAG__AA_GGCCGG_AG
20._PA_150_[PER]
GG__GT______GG__GG
21._PA_150_[PER]
GG__GT______GG__GG
22._PA_150_[PER]
GG__GT______GG__GG
23._PA_150_[PER]
GG__GT______GG__GG
24._PA_150_[PER]
GG__GT______GG__GG
25._PA_150_[PER]
AA__GG______CC__AG
26._PA_150_[PER]
AG__GG______CG__AG
27._GC-01-034-2-11
AG_CTGGAG__AC_CGCGAG_AG
28._PA_150_[PER]
GG__GG______CC__AA
29._GC-01-34-2-11
___CCAG__AA_CGCCGG_AG
30._GC-01-34-2-11
___ACGG__AA_CCCCGG_GG
31._GC-01-34-2-11
___ACGG__AA_CCCCGG_GG
 4344454647484950515253545556
_Input profile
CCTTAACCGGTTCCGGAACCTTGGTTGG
1._PA_150_[PER]
____GG_CC___TT___
2._PA_150_[PER]
____GG_CC___TT___
3._PA_150_[PER]
____GG_CC___TT___
4._PA_150_[PER]
____GG_____TT___
5._GC-01-034-2-11
CC___AG_CC___TT___
6._GC-01-034-2-11
CC___AG_CC___TT___
7._GC-01-034-2-11
CC___AG_CC___TT___
8._GC-01-034-2-11
CC___AG_CC___TT___
9._PA_150_[PER]
____AG_CC___TT___
10._PA_150_[PER]
____AG_CC___TT___
11._PA_150_[PER]
____AG_CC___TT___
12._PA_150_[PER]
____AG_CC___TT___
13._GC-01-034-2-11
TT___GG_CT___TT___
14._GC-01-034-2-11
TT___GG_CT___TT___
15._GC-01-034-2-11
TT___GG_CT___TT___
16._GC-01-034-2-11
TT___GG_CT___TT___
17._GC-01-034-2-11
TT___GG_CT___TT___
18._RUQ_1731
____GG_____AA___
19._PA_150_[PER]_Fld#_173_Plt#_1
____GG_____AA___
20._PA_150_[PER]
____GG_CT___TT___
21._PA_150_[PER]
____GG_CT___TT___
22._PA_150_[PER]
____GG_CT___TT___
23._PA_150_[PER]
____GG_CT___TT___
24._PA_150_[PER]
____GG_CT___TT___
25._PA_150_[PER]
____GG_CC___TT___
26._PA_150_[PER]
____AG_CT___GT___
27._GC-01-034-2-11
CT___AG_CT___GT___
28._PA_150_[PER]
____GG_____GT___
29._GC-01-34-2-11
____AG_____AA___
30._GC-01-34-2-11
____GG_____AA___
31._GC-01-34-2-11
____GG_____AA___
 57585960          
_Input profile
GGGGTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-034-2-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-034-2-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-034-2-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-034-2-11
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_150_[PER]
_GG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-034-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-01-034-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-01-034-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-034-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-034-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._RUQ_1731
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_150_[PER]_Fld#_173_Plt#_1
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._PA_150_[PER]
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-034-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._PA_150_[PER]
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-34-2-11
_CC__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-34-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-34-2-11
_CG__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_150_[PER] RUQ_1731

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._PA_150_[PER]

96.2 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

2._PA_150_[PER]

96.2 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

3._PA_150_[PER]

96.2 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

4._PA_150_[PER]

95.8 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

5._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

9._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

11._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

12._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

13._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_150_[PER] RUQ_1731

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

61.8 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

20._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

22._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

23._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

24._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

25._PA_150_[PER]

61.5 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

26._PA_150_[PER]

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

27._PA_150_[PER] GC-01-034-2-11

57.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

28._PA_150_[PER]

50 %
12 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

29._PA_150_[PER] GC-01-34-2-11

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] GC-01-34-2-11

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1237 53TcSNP1253 54TcSNP1275 55TcSNP1293
56TcSNP1401 57TcSNP1404 58TcSNP1458 59TcSNP1524 60TcSNP1527